This graph-plot was generated using the Seurat package of R (Macosko et al., 2015).
AP: Apical progenitors; BP: daughter basal progenitors; EN: Early neurons; LN: Late neurons. See Fig. 2 for details.

This graph-plot was performed using the Waterfall bioinformatics pipeline (Shin et al., Cell Stem Cell, 2015) as described in detail in the manuscript. This approach generates a "pseudotime" line along which temporally related neurons are aligned by developmental progression stage. Neurons are distributed along this pseudotime which spans 6-48 hours following mitosis in our samples. Progenitors have been aligned at the onset of the pseudotime to highlight neuronal gene expression dynamics. A local regression fitting of single-cell gene expression along the pseudotime axis was performed to generate individual gene expression profiles (green line). Shaded gray area represents 95% confidence interval. Progenitor cells are represented in red while neurons are represented in blue. Shades of blue represent cells collected at different ages (see Fig. 4 for details).

This table provides the 50 transcripts with the most similar time courses to the ones entered in the query. See manuscript for details.

This table provides the 50 transcripts with the most similar violin plots to the ones entered in the query.